STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpBPenicillin-binding protein 2B; KEGG: tte:TTE1916 5.5e-44 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; Psort location: CytoplasmicMembrane, score: 9.82. (572 aa)    
Predicted Functional Partners:
EEF68114.1
PASTA domain protein; KEGG: bca:BCE_3904 0.00011 serine/threonine protein kinase K08884.
  
 0.997
ponA
KEGG: gka:GK2168 1.5e-105 penicillin-binding protein 1A/1B (PBP1) (penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)) K05366; Psort location: Extracellular, score: 9.55.
 
 0.983
EEF66175.1
Transglycosylase; KEGG: bcz:BCZK1431 4.6e-72 penicillin-binding protein; Psort location: Extracellular, score: 9.55.
 
 0.981
EEF66174.1
Hypothetical protein; KEGG: bha:BH1702 1.3e-22 ponA; penicillin-binding proteins 1A/1B (penicillin-insensitive transglycosylase / penicillin-sensitive transpeptidase) K05366; Psort location: Extracellular, score: 9.55.
 
 0.974
EEF68628.1
Transglycosylase; KEGG: bha:BH3812 3.5e-113 penicillin-binding protein K05366; Psort location: Extracellular, score: 9.55.
 
 0.966
EEF67988.1
Cell cycle protein, FtsW/RodA/SpoVE family; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 0.964
murF
KEGG: tte:TTE2546 3.5e-81 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase K01929; Psort location: Cytoplasmic, score: 9.91.
 
 
 0.963
EEF66449.1
POTRA domain protein, FtsQ-type; Essential cell division protein.
 
 
 0.958
EEF68192.1
Transglycosylase; KEGG: mmr:Mmar10_2868 2.1e-36 penicillin-binding protein, 1A family K05364; Psort location: Extracellular, score: 9.55.
 
 0.956
ftsW
Cell division protein FtsW; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 0.954
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.