STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68089.1Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 2.6e-204 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; Psort location: CytoplasmicMembrane, score: 7.63. (681 aa)    
Predicted Functional Partners:
EEF68091.1
Bacterial sugar transferase; KEGG: cph:Cpha266_1830 6.8e-30 undecaprenyl-phosphate galactose phosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.988
EEF67062.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: ava:Ava_0899 1.5e-64 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K00811; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.977
EEF67952.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 1.0e-67 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.975
EEF67056.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: vfi:VF0184 8.0e-123 CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase K01726; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.934
EEF67787.1
Glycosyltransferase, group 2 family protein; KEGG: tth:TTC0528 3.7e-31 rfbF; dTDP-rhamnosyl transferase RfbF.
  
 
 0.915
EEF67946.1
Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 0.907
EEF68137.1
Hypothetical protein; KEGG: bsu:BG12508 1.3e-17 ywqD; similar to capsular polysaccharide biosynthesis protein K00903; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.893
EEF67840.1
Capsular exopolysaccharide family; KEGG: bsu:BG12508 2.8e-33 ywqD; similar to capsular polysaccharide biosynthesis protein K00903; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.893
EEF66614.1
KEGG: rxy:Rxyl_1943 1.3e-19 protein-tyrosine kinase K08252; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.893
EEF66563.1
Hypothetical protein; KEGG: bcl:ABC3815 2.7e-12 tyrosine-protein kinase K00903; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.893
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.