STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68035.1Amidohydrolase family protein; KEGG: hma:rrnAC3411 6.8e-46 metal dependent amidohydrolase superfamily protein K01443:K01427:K01465:K01486; Psort location: Cytoplasmic, score: 8.87. (533 aa)    
Predicted Functional Partners:
EEF68613.1
KEGG: ecc:c3880 1.9e-89 yhaE; 2-hydroxy-3-oxopropionate reductase K00042; Psort location: Cytoplasmic, score: 8.87.
    
  0.702
EEF66797.1
Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; KEGG: cpf:CPF_0381 1.3e-76 garR; 2-hydroxy-3-oxopropionate reductase K00042.
    
  0.702
EEF67833.1
4Fe-4S binding domain protein; KEGG: tte:TTE0893 4.1e-229 nuoF; NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335; Psort location: Cytoplasmic, score: 9.98.
    
  0.695
EEF67145.1
4Fe-4S binding domain protein; KEGG: ctc:CTC02417 2.1e-42 periplasmic [Fe] hydrogenase 1 K00533; Psort location: Cytoplasmic, score: 8.87.
    
  0.693
EEF66139.1
4Fe-4S binding domain protein; KEGG: mka:MK0307 8.0e-10 fwdF_1; probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing K00205.
    
  0.693
EEF67766.1
Hydrolase, NUDIX family; KEGG: lpl:lp_3123 3.7e-38 pyrophosphatase (putative) K03659; Psort location: Cytoplasmic, score: 8.87; Belongs to the Nudix hydrolase family.
    
  0.688
EEF67698.1
Amidohydrolase family protein; KEGG: mta:Moth_1302 3.7e-54 N-acyl-D-amino-acid deacylase; Psort location: Cytoplasmic, score: 9.98.
     0.633
glyS
glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.416
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.