STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68015.1Peptidase, M50 family; KEGG: bha:BH3015 3.5e-19 spoIVFB; protease (processing of pro-sigma-K to active sigma-K) K06402; Psort location: CytoplasmicMembrane, score: 9.99. (261 aa)    
Predicted Functional Partners:
EEF69174.1
Peptidase, M23 family; KEGG: mxa:MXAN_4449 0.00025 cell wall peptidase, M23 family.
  
  
 0.829
EEF67846.1
Putative phage tail component domain protein.
  
    0.812
spoIIP
Stage II sporulation protein P (SpoIIP).
  
  
 0.810
EEF66835.1
Putative sporulation protein YqfD.
 
    0.802
EEF66074.1
Hypothetical protein.
 
    0.797
EEF68014.1
Peptidase, M23 family.
       0.795
EEF66184.1
Putative stage V sporulation protein B; Psort location: CytoplasmicMembrane, score: 9.99.
  
   
 0.781
EEF69167.1
KEGG: gka:GK0057 2.4e-22 spoIIE; stage II sporulation protein E (serine phosphatase) K01090; Psort location: CytoplasmicMembrane, score: 9.97.
  
  
 0.760
yunB
Sporulation protein YunB.
 
   
 0.747
spoIVA
Stage IV sporulation protein A; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.742
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.