STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67954.1Glycosyl hydrolase family 25; KEGG: rle:RL3328 3.2e-16 putative glycosyl transferase K01185; Psort location: Cytoplasmic, score: 8.87. (290 aa)    
Predicted Functional Partners:
pbpB
Penicillin-binding protein 2B; KEGG: tte:TTE1916 5.5e-44 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; Psort location: CytoplasmicMembrane, score: 9.82.
    
 0.700
EEF68114.1
PASTA domain protein; KEGG: bca:BCE_3904 0.00011 serine/threonine protein kinase K08884.
    
 0.700
EEF68115.1
KEGG: tte:TTE1916 9.5e-104 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; Psort location: CytoplasmicMembrane, score: 9.82.
    
 0.688
EEF67667.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
 0.688
EEF67257.1
TIGR02677 family protein; Psort location: Cytoplasmic, score: 8.87.
    
 0.688
EEF66754.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: bcz:BCZK2802 5.1e-96 pbp2; penicillin-binding protein 2 K05364; Psort location: CytoplasmicMembrane, score: 9.82.
    
 0.688
EEF66346.1
Collagen triple helix repeat protein; KEGG: gga:418942 2.2e-25 LOC418942; similar to Mitochondrial intermediate peptidase K01410.
    
 0.688
EEF66348.1
Putative protein BclA; KEGG: gga:418942 1.2e-21 LOC418942; similar to Mitochondrial intermediate peptidase K01410.
    
 0.688
EEF68628.1
Transglycosylase; KEGG: bha:BH3812 3.5e-113 penicillin-binding protein K05366; Psort location: Extracellular, score: 9.55.
    
 0.683
EEF68192.1
Transglycosylase; KEGG: mmr:Mmar10_2868 2.1e-36 penicillin-binding protein, 1A family K05364; Psort location: Extracellular, score: 9.55.
    
 0.683
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.