STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67927.1WXG100 family type VII secretion target; Belongs to the WXG100 family. (100 aa)    
Predicted Functional Partners:
EEF67930.1
FtsK/SpoIIIE family protein; KEGG: pen:PSEEN2212 1.1e-14 ftsK; cell division protein FtsK; Psort location: CytoplasmicMembrane, score: 7.80.
  
 
 0.972
EEF66143.1
FtsK/SpoIIIE family protein; KEGG: pen:PSEEN2212 9.2e-106 ftsK; cell division protein FtsK; Psort location: CytoplasmicMembrane, score: 7.63; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.900
EEF67928.1
Hypothetical protein; Belongs to the WXG100 family.
       0.758
EEF67929.1
Bacterial group 2 Ig-like protein; Psort location: Cytoplasmic, score: 8.87.
       0.756
EEF67931.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.732
EEF69247.1
ATPase, AAA family; KEGG: cac:CAC0955 2.9e-05 ATP-dependent Zn protease; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.575
EEF69261.1
ATPase, AAA family; KEGG: eci:UTI89_C2925 2.5e-78 clpB; heat shock protein K03695; Psort location: Cytoplasmic, score: 9.98; Belongs to the ClpA/ClpB family.
   
 
 0.530
EEF67963.1
ATPase family associated with various cellular activities (AAA); KEGG: cpr:CPR_1416 2.6e-211 clpB; ClpB protein K03695; Psort location: Cytoplasmic, score: 9.98; Belongs to the ClpA/ClpB family.
   
 
 0.530
EEF67951.1
Hypothetical protein; KEGG: cpr:CPR_1416 1.3e-15 clpB; ClpB protein K03695; Psort location: Cytoplasmic, score: 9.98.
   
 
 0.530
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.530
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.