STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67947.1Dinitrogenase iron-molybdenum cofactor; KEGG: pmu:PM1567 0.0010 fkpA; FkbP-type peptidyl-prolyl cis-trans isomerase K03775; Psort location: Cytoplasmic, score: 8.87. (128 aa)    
Predicted Functional Partners:
EEF67946.1
Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
  
 0.901
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737.
  
  
 0.716
EEF69471.1
Trypsin; KEGG: lin:lin0320 1.3e-58 similar to heat-shock protein htrA serine protease.
  
 
 0.663
EEF68221.1
Trypsin; KEGG: tte:TTE2568 3.8e-61 degQ2; trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain.
  
 
 0.663
EEF66686.1
Trypsin; KEGG: tte:TTE2568 2.3e-68 degQ2; trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain.
  
 
 0.663
leuS
leucine--tRNA ligase; KEGG: gka:GK2842 2.1e-296 leuS; leucyl-tRNA synthetase K01869; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.661
EEF67945.1
Hypothetical protein.
       0.549
EEF68319.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
   0.546
EEF66575.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
   0.546
EEF67948.1
Acetyltransferase, GNAT family; KEGG: bce:BC4760 7.4e-17 acetyltransferase K00680; Psort location: Cytoplasmic, score: 8.87.
       0.532
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.