STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67904.1Prepilin-type cleavage/methylation N-terminal domain protein. (426 aa)    
Predicted Functional Partners:
EEF67886.1
KEGG: pen:PSEEN2333 1.6e-94 xcpR-2; type II secretion pathway protein E K01509; Psort location: Cytoplasmic, score: 9.98.
  
 0.933
EEF66758.1
KEGG: pen:PSEEN5305 3.7e-38 type II secretion system protein E; Psort location: Cytoplasmic, score: 9.36.
  
 0.933
EEF67008.1
Prepilin-type cleavage/methylation N-terminal domain protein.
  
 
0.911
EEF66760.1
Prepilin-type cleavage/methylation N-terminal domain protein.
  
 
 0.911
EEF67879.1
Bacterial type II secretion system domain protein F; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.736
EEF66759.1
Bacterial type II secretion system domain protein F; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.736
EEF65801.1
Bacterial type II secretion system domain protein F; Psort location: CytoplasmicMembrane, score: 7.63.
  
  
 0.736
EEF67891.1
Bacterial peptidase A24, N-terminal domain protein; KEGG: tth:TTC1716 3.6e-45 pilD; type 4 prepilin peptidase pilD K02654; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.732
dprA
DNA protecting protein DprA; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.731
EEF66319.1
comEA protein; KEGG: ava:Ava_1534 0.00043 RNA binding S1; Psort location: CytoplasmicMembrane, score: 9.49.
  
  
 0.728
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.