STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67867.1Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: dps:DP2271 5.8e-49 probable deoxycytidylate deaminase K01493; Psort location: Cytoplasmic, score: 8.87. (160 aa)    
Predicted Functional Partners:
tdk
Thymidine kinase; KEGG: bsu:BG10419 4.8e-61 tdk; thymidine kinase K00857; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.976
tmk
dTMP kinase; KEGG: gka:GK0024 3.6e-40 thymidylate kinase K00943; Psort location: Cytoplasmic, score: 8.87.
    
 0.939
cmk
Cytidylate kinase; KEGG: bsu:BG11004 3.8e-52 cmk, jofC, ypfC; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
    
  0.915
dut
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
 0.907
EEF69761.1
KEGG: lin:lin1782 2.2e-05 hypothetical protein K08680; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.902
EEF67865.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
  
 0.830
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.818
EEF67819.1
Riboflavin biosynthesis protein RibD C-terminal domain protein; KEGG: chu:CHU_1297 2.4e-18 dfr; dihydrofolate reductase family protein K00287; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.805
EEF66966.1
Oxidoreductase.
  
 
 0.805
folA
KEGG: son:SO3646 2.0e-23 folA; dihydrofolate reductase K00287; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.805
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.