STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67853.1Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: sth:STH1075 5.6e-19 putative D-alanyl-D-alanine carboxypeptidase K07260; Psort location: Cytoplasmic, score: 9.36. (340 aa)    
Predicted Functional Partners:
EEF67854.1
Putative glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.823
EEF66418.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: gka:GK2311 6.0e-86 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) K01286; Belongs to the peptidase S11 family.
    
 0.819
EEF66617.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: gka:GK2286 2.3e-54 D-alanyl-D-alanine carboxypeptidase K01286; Belongs to the peptidase S11 family.
    
 0.812
pbpB
Penicillin-binding protein 2B; KEGG: tte:TTE1916 5.5e-44 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; Psort location: CytoplasmicMembrane, score: 9.82.
    
 0.803
EEF68114.1
PASTA domain protein; KEGG: bca:BCE_3904 0.00011 serine/threonine protein kinase K08884.
    
 0.803
ponA
KEGG: gka:GK2168 1.5e-105 penicillin-binding protein 1A/1B (PBP1) (penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)) K05366; Psort location: Extracellular, score: 9.55.
    
 0.803
EEF66174.1
Hypothetical protein; KEGG: bha:BH1702 1.3e-22 ponA; penicillin-binding proteins 1A/1B (penicillin-insensitive transglycosylase / penicillin-sensitive transpeptidase) K05366; Psort location: Extracellular, score: 9.55.
    
 0.803
EEF66175.1
Transglycosylase; KEGG: bcz:BCZK1431 4.6e-72 penicillin-binding protein; Psort location: Extracellular, score: 9.55.
    
 0.803
EEF67138.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bcl:ABC1175 1.5e-43 D-alanyl-D-alanine carboxypeptidase K01286; Belongs to the peptidase S11 family.
    
 0.750
EEF68115.1
KEGG: tte:TTE1916 9.5e-104 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.743
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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