STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEF67776.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (188 aa)    
Predicted Functional Partners:
EEF67777.1
KEGG: btl:BALH_0395 1.3e-65 type I phosphodiesterase/nucleotide pyrophosphatase family protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.850
recQ
KEGG: cpf:CPF_0327 2.9e-148 recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.755
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.725
nadE
NAD+ synthase; KEGG: tte:TTE0640 6.1e-61 nadE; NAD synthase K01950; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD synthetase family.
  
  
 0.694
EEF66714.1
SNF2 family N-terminal domain protein; KEGG: lwe:lwe1660 5.8e-120 DNA/RNA helicase protein K01529; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.628
EEF66107.1
SNF2 family N-terminal domain protein; KEGG: cal:orf19.5367 1.4e-34 RDH54; helicase required for mitotic diploid-specific recombination and repair K01509; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.619
EEF69474.1
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; KEGG: gka:GK3297 5.2e-151 phosphomannomutase K01840; Psort location: Cytoplasmic, score: 8.87.
  
   0.610
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
   0.610
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.598
EEF67037.1
KEGG: bld:BLi00044 8.1e-43 holB; DNA polymerase III (delta' subunit); RBL03153 K02341; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.583
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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