STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67718.1LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 6.7e-06 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 9.98. (238 aa)    
Predicted Functional Partners:
EEF68504.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01848 8.5e-87 yesM; two-component sensor kinase YesM K07718; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.963
EEF67000.1
HAMP domain protein; KEGG: gka:GK1912 3.4e-40 two-component sensor histidine kinase K07718; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.963
EEF69347.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01848 3.0e-100 yesM; two-component sensor kinase YesM K07718; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.961
EEF69017.1
Hypothetical protein; KEGG: lpl:lp_1355 7.9e-10 pltK; histidine protein kinase; sensor protein.
 
 
 0.932
EEF68922.1
Hypothetical protein; KEGG: tte:TTE0562 1.4e-20 baeS2; sensory transduction histidine kinases K07706; Psort location: CytoplasmicMembrane, score: 9.97.
 
 
 0.868
EEF68822.1
KEGG: lin:lin0043 2.6e-09 similar to sensor histidine kinase (AgrC from Staphylococcus) K07706; Psort location: CytoplasmicMembrane, score: 9.97.
 
  
 0.847
EEF67610.1
Hypothetical protein; KEGG: lmf:LMOf2365_0059 4.5e-09 agrC; accessory gene regulator protein C K07706; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.844
EEF65991.1
KEGG: tte:TTE0562 4.9e-13 baeS2; sensory transduction histidine kinases K07706; Psort location: CytoplasmicMembrane, score: 7.63.
 
  
 0.808
EEF65989.1
Response regulator receiver domain protein; KEGG: aci:ACIAD0627 1.2e-07 baeR; transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis K07664; Psort location: Cytoplasmic, score: 8.87.
  
     0.775
EEF69305.1
PAS domain S-box protein; KEGG: ret:RHE_PF00222 5.0e-08 probable two-component sensor histidine kinase protein; Psort location: Cytoplasmic, score: 8.87.
    
 0.741
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.