STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67707.1Creatinase; KEGG: fnu:FN0453 1.8e-139 Xaa-Pro aminopeptidase K01262; Psort location: Cytoplasmic, score: 8.87. (594 aa)    
Predicted Functional Partners:
pepD
Xaa-His dipeptidase; KEGG: bca:BCE_2527 3.9e-82 pepD; aminoacyl-histidine dipeptidase K01270; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.804
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.793
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.789
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
 
 0.789
EEF66041.1
FAD dependent oxidoreductase; KEGG: ctc:CTC00417 6.9e-22 oxidoreductase K00100; Psort location: Cytoplasmic, score: 8.87.
  
 0.757
EEF66042.1
Rieske [2Fe-2S] domain protein; KEGG: bce:BC0399 1.4e-23 oxidoreductase.
  
 0.757
EEF66064.1
Methyltransferase domain protein; KEGG: cvi:CV0170 2.9e-54 probable methyl transferase K00599; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.752
EEF67528.1
KEGG: gsu:GSU0794 1.3e-90 pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein K00359; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.748
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 
 0.740
EEF66225.1
KEGG: lin:lin0179 4.2e-220 similar to inosine monophosphate dehydrogenase K00088; Psort location: Cytoplasmic, score: 8.87.
   
   0.723
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.