STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67658.1Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1710 2.3e-09 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00. (292 aa)    
Predicted Functional Partners:
EEF67659.1
KEGG: ret:RHE_PB00077 0.0045 probable sugar ABC transporter, ATP-binding protein K02056.
    0.998
EEF67657.1
KEGG: reh:H16_A1397 9.0e-60 ABC-type transporter, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
    0.997
EEF67660.1
Hypothetical protein.
       0.511
EEF66402.1
Creatininase; KEGG: hma:rrnAC0223 1.3e-21 camH3; creatinine amidohydrolase K01470; Psort location: Cytoplasmic, score: 8.87.
   
    0.424
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.