STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67659.1KEGG: ret:RHE_PB00077 0.0045 probable sugar ABC transporter, ATP-binding protein K02056. (329 aa)    
Predicted Functional Partners:
EEF67658.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1710 2.3e-09 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00.
    0.998
EEF67657.1
KEGG: reh:H16_A1397 9.0e-60 ABC-type transporter, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.968
EEF69305.1
PAS domain S-box protein; KEGG: ret:RHE_PF00222 5.0e-08 probable two-component sensor histidine kinase protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.820
EEF69295.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: syn:slr2104 3.6e-75 hik22; two-component hybrid histidine kinase K02486; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.820
EEF69297.1
PAS domain S-box protein; KEGG: mag:amb1110 1.1e-64 signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.820
EEF68413.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: bpm:BURPS1710b_A1493 5.7e-20 GGDEF domain protein; Psort location: Cytoplasmic, score: 8.87.
    
  0.804
EEF67023.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: wsu:WS0975 2.7e-25 cheA; hybrid histidine kinase K03407; Psort location: Cytoplasmic, score: 8.87.
    
  0.804
EEF68421.1
RND transporter, HAE1/HME family, permease protein; KEGG: eci:UTI89_C2351 1.4e-71 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
  0.730
EEF65856.1
Efflux transporter, RND family, MFP subunit; KEGG: ptr:470307 1.0e-07 ROCK2, LOC470307; Rho-associated, coiled-coil containing protein kinase 2 K04514; Psort location: Extracellular, score: 7.62; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.729
EEF69308.1
Response regulator receiver domain protein; KEGG: syn:slr2099 1.1e-16 hik40; two-component hybrid histidine kinase K02486; Psort location: Cytoplasmic, score: 9.98.
    
  0.728
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.