STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67567.1Cupin domain protein; Psort location: Cytoplasmic, score: 8.87. (114 aa)    
Predicted Functional Partners:
EEF68694.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
 0.896
purB
KEGG: gka:GK0259 6.3e-162 adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 8.87.
   
 0.799
EEF68426.1
KEGG: ttj:TTHA1104 1.1e-47 prephenate dehydratase K04518; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.767
EEF67672.1
KEGG: cpe:CPE0698 7.6e-15 chorismate mutase K04516; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.767
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.746
EEF67355.1
Cupin domain protein; KEGG: lpl:lp_2852 6.2e-29 4-carboxymuconolactone decarboxylase (putative) K01607; Psort location: Cytoplasmic, score: 8.87.
    
 0.741
EEF66205.1
KEGG: lwe:lwe2607 2.1e-37 acetyltransferase, GNAT family K00657; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.740
EEF65701.1
Hypothetical protein; KEGG: blo:BL1028 0.0046 possible N-acetyl transferase K03823; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.740
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.732
EEF68545.1
DJ-1/PfpI family protein; KEGG: gme:Gmet_2409 3.5e-19 peptidase C56, PfpI K05520; Psort location: Cytoplasmic, score: 8.87.
    
 0.714
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.