STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67448.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (411 aa)    
Predicted Functional Partners:
EEF67449.1
Hypothetical protein.
 
     0.822
EEF69571.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C0798 3.9e-98 rhlE; putative ATP-dependent RNA helicase RhlE; Psort location: Cytoplasmic, score: 8.87; Belongs to the DEAD box helicase family.
   
 0.763
EEF68902.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 2.5e-64 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; Psort location: Cytoplasmic, score: 8.87.
   
 0.763
EEF67903.1
DEAD/DEAH box helicase; KEGG: sab:SAB1965c 4.7e-96 ATP-dependent RNA helicase; Psort location: Cytoplasmic, score: 8.87; Belongs to the DEAD box helicase family.
   
 0.763
EEF67678.1
Hypothetical protein.
   
 0.763
cshB
KEGG: sab:SAB1430c 1.7e-88 probable ATP-dependent RNA helicase K01529; Psort location: Cytoplasmic, score: 8.87.
   
 0.763
EEF67450.1
Hypothetical protein.
       0.693
EEF67451.1
Hypothetical protein.
       0.693
EEF67818.1
CoA binding domain protein; KEGG: pfu:PF1540 3.6e-79 ADP forming acetyl coenzyme A synthetase K01905; Psort location: Cytoplasmic, score: 8.87.
    
   0.641
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
  
 0.579
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.