STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67387.1MT-A70; KEGG: spj:MGAS2096_Spy1128 3.0e-59 adenine-specific methyltransferase K00571; Belongs to the MT-A70-like family. (181 aa)    
Predicted Functional Partners:
EEF67391.1
Hypothetical protein.
 
     0.794
EEF67392.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.771
EEF67388.1
Tat pathway signal sequence domain protein.
       0.761
EEF67389.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.761
EEF67390.1
Hypothetical protein.
       0.737
EEF67393.1
Hypothetical protein.
 
     0.721
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.624
EEF67935.1
NOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 1.2e-64 putative 23S rRNA m(5)C methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.622
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.594
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.575
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.