Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEF67397.1CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 4.1e-10 DNA primase K02316; Psort location: Cytoplasmic, score: 8.87. (1016 aa)    
Predicted Functional Partners:
EEF67400.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     0.984
EEF67398.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     0.974
EEF67401.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.937
EEF67395.1
DNA topoisomerase; KEGG: efa:EF2312 2.4e-208 topB-2; DNA topoisomerase III K03169; Psort location: Cytoplasmic, score: 8.87.
 
     0.908
EEF67392.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.892
EEF67393.1
Hypothetical protein.
 
     0.889
EEF67391.1
Hypothetical protein.
 
     0.869
EEF67388.1
Tat pathway signal sequence domain protein.
 
     0.839
EEF67406.1
Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.836
EEF67399.1
Helicase C-terminal domain protein; KEGG: chu:CHU_1468 4.5e-11 dpn; possible adenine-specific DNA methylase K00599; Psort location: Extracellular, score: 7.50.
 
   
0.818
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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