STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67406.1Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.87. (470 aa)    
Predicted Functional Partners:
EEF68867.1
Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
 
 0.869
EEF67401.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.857
EEF67397.1
CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 4.1e-10 DNA primase K02316; Psort location: Cytoplasmic, score: 8.87.
 
     0.837
EEF67400.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.836
EEF67398.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.825
EEF67395.1
DNA topoisomerase; KEGG: efa:EF2312 2.4e-208 topB-2; DNA topoisomerase III K03169; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.818
EEF67399.1
Helicase C-terminal domain protein; KEGG: chu:CHU_1468 4.5e-11 dpn; possible adenine-specific DNA methylase K00599; Psort location: Extracellular, score: 7.50.
 
     0.808
EEF66173.1
KEGG: cyb:CYB_1515 4.6e-15 tetratricopeptide repeat/protein kinase domain protein K08884; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.800
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.791
EEF67391.1
Hypothetical protein.
 
     0.788
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.