Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEF67323.1Hypothetical protein. (49 aa)    
Predicted Functional Partners:
EEF67324.1
Hypothetical protein.
       0.570
EEF67325.1
Class II Aldolase and Adducin domain protein; KEGG: cpf:CPF_1051 2.7e-90 fucA; L-fuculose phosphate aldolase K01628; Psort location: Cytoplasmic, score: 8.87.
       0.542
EEF67326.1
Carbohydrate kinase, FGGY family protein; KEGG: bfs:BF0214 1.5e-87 fucK, rhaB; putative fuculokinase K00848; Psort location: Cytoplasmic, score: 8.87.
       0.413
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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