STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67365.1DNA-binding helix-turn-helix protein; Psort location: CytoplasmicMembrane, score: 9.97. (260 aa)    
Predicted Functional Partners:
EEF68653.1
Hypothetical protein.
 
 0.803
EEF65946.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
 0.801
EEF68206.1
Hypothetical protein.
  
 
 0.778
EEF66134.1
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
    
 0.771
EEF69805.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.766
EEF69020.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.766
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737.
  
 
 0.757
EEF66830.1
DNA-binding helix-turn-helix protein; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.753
nadE
NAD+ synthase; KEGG: tte:TTE0640 6.1e-61 nadE; NAD synthase K01950; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD synthetase family.
    
 0.751
EEF67328.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.740
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.