STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF67109.1Hydrolase, alpha/beta domain protein; KEGG: bcl:ABC3006 5.4e-14 carboxylesterase K01044; Psort location: Cytoplasmic, score: 8.87. (251 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.688
EEF69361.1
Hypothetical protein.
    
 0.667
EEF66386.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
 0.667
EEF68234.1
AMP-binding enzyme; KEGG: pca:Pcar_1619 3.6e-65 AMP-binding enzyme family protein K01897; Psort location: Cytoplasmic, score: 9.98.
    
  0.628
EEF67275.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75.
    
 0.626
EEF68237.1
AMP-binding enzyme; KEGG: mav:MAV_3056 2.0e-126 linear gramicidin synthetase subunit D; Psort location: Cytoplasmic, score: 9.96.
    
  0.612
EEF67104.1
Acyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.612
EEF67110.1
Hypothetical protein; KEGG: eci:UTI89_C3473 0.0027 assT; arylsulfate sulfotransferase K01023.
 
     0.569
EEF67108.1
Hypothetical protein; KEGG: gox:GOX1630 2.9e-06 putative oxidoreductase K00100.
       0.540
EEF65785.1
Hypothetical protein.
  
     0.528
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.