STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66955.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (359 aa)    
Predicted Functional Partners:
EEF69787.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.954
EEF67416.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     0.640
EEF67025.1
Efflux transporter, RND family, MFP subunit; KEGG: cal:orf19.4072 1.5e-13 HYR10; similar to cell surface flocculin K01186; Psort location: Cellwall, score: 9.17.
   
    0.632
EEF68940.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
      0.627
EEF69620.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.613
EEF65727.1
KEGG: pen:PSEEN3665 0.0013 efflux ABC transporter, ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.426
EEF65620.1
Hypothetical protein; KEGG: par:Psyc_1392 0.00046 possible pyridine nucleotide-disulphide oxidoreductase K00520; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.424
EEF66954.1
Alpha amylase, catalytic domain protein; KEGG: bld:BLi00656 7.4e-136 alpha-amylase precursor K01176; Psort location: Extracellular, score: 9.55; Belongs to the glycosyl hydrolase 13 family.
       0.420
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
  
    0.408
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.