STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66876.1Hypothetical protein; KEGG: rxy:Rxyl_1642 0.0070 ATP synthase F0, B subunit K02109; Psort location: Cytoplasmic, score: 8.87. (101 aa)    
Predicted Functional Partners:
EEF66875.1
Hypothetical protein; KEGG: pfl:PFL_5034 0.00090 cyoD; cytochrome o ubiquinol oxidase, subunit IV K02300; Psort location: CytoplasmicMembrane, score: 9.99.
       0.737
EEF66877.1
Hypothetical protein.
       0.520
EEF66878.1
Hypothetical protein; KEGG: vvu:VV2_1180 9.1e-17 GTP cyclohydrolase II K01497; Psort location: Cytoplasmic, score: 8.87.
       0.520
EEF66874.1
HAD hydrolase, family IIB; KEGG: aha:AHA_0482 7.4e-17 phosphatase YidA K01112; Psort location: Cytoplasmic, score: 8.87.
       0.512
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.