STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66824.1RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (258 aa)    
Predicted Functional Partners:
yqeV
tRNA methylthiotransferase YqeV; KEGG: bce:BC4308 2.8e-88 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.892
EEF67981.1
DnaJ domain protein; KEGG: cme:CMJ043C 2.8e-10 phycocyanobilin lyase alpha subunit K02288; Psort location: Cytoplasmic, score: 9.65.
  
 
 0.801
EEF67962.1
Putative chaperone protein DnaJ; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.801
EEF66826.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.795
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
  
 0.794
murE-2
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
  
    0.703
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.674
EEF67239.1
Peptidase, U32 family; KEGG: bld:BLi02862 9.6e-95 yrrO; similar to protease; RBL00143 K08303; Psort location: Cytoplasmic, score: 8.87.
  
    0.665
EEF67241.1
Peptidase, U32 family; KEGG: bli:BL02027 2.5e-25 yrrN; calcium-binding EF-hand K08303; Psort location: Cytoplasmic, score: 8.87.
  
    0.665
EEF66310.1
Peptidase, U32 family; KEGG: mta:Moth_1712 3.6e-117 peptidase U32 K08303; Psort location: Cytoplasmic, score: 8.87.
  
    0.665
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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