STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66709.1Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. (205 aa)    
Predicted Functional Partners:
EEF66708.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.773
EEF66849.1
Hydrolase, P-loop family; KEGG: cjk:jk1734 2.7e-14 alr; hypothetical protein K01775; Psort location: Cytoplasmic, score: 8.87.
      0.708
EEF67044.1
Hypothetical protein; KEGG: bcl:ABC1271 0.0094 fruA; PTS system, fructose-specific enzyme II, BC component K02768:K02769:K02770; Psort location: CytoplasmicMembrane, score: 9.99.
  
   
 0.503
EEF67489.1
Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.491
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.487
cmk
Cytidylate kinase; KEGG: bsu:BG11004 3.8e-52 cmk, jofC, ypfC; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
       0.458
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.457
EEF66710.1
Hypothetical protein; KEGG: mpe:MYPE6470 4.6e-09 parC; DNA topoisomerase IV subunit A K02621.
       0.456
EEF67375.1
Putative dipeptidase; KEGG: tte:TTE1746 2.8e-79 argE2; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and related deacylases K01439; Psort location: Cytoplasmic, score: 8.87.
 
     0.448
EEF67288.1
Putative proton-coupled thiamine transporter YuaJ; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.446
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.