STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66700.1EDD domain protein, DegV family; Psort location: Cytoplasmic, score: 8.87. (282 aa)    
Predicted Functional Partners:
EEF66451.1
DAK2 domain fusion protein YloV; KEGG: bcz:BCZK3615 6.6e-119 dhaK; possible dihydroxyacetone-related kinase K00863; Psort location: Cytoplasmic, score: 8.87.
 
 0.994
EEF67893.1
Hypothetical protein; KEGG: bcz:BCZK3615 2.2e-05 dhaK; possible dihydroxyacetone-related kinase K00863; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.840
EEF66433.1
Hypothetical protein; KEGG: bcz:BCZK3615 1.5e-10 dhaK; possible dihydroxyacetone-related kinase K00863.
  
 
 0.778
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
    
  0.623
EEF66450.1
Hypothetical protein; KEGG: hdu:HD0213 0.00084 srmB; ATP-dependent RNA helicase protein K05590.
 
    0.567
EEF66701.1
PRD domain protein; KEGG: eci:UTI89_C3094 2.4e-06 fhlA; formate hydrogenlyase transcriptional activator K01768; Psort location: Cytoplasmic, score: 8.87.
       0.406
EEF66702.1
PTS system fructose IIA component; KEGG: ljo:LJ0742 2.0e-14 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific K02793.
       0.406
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.