STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66649.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (444 aa)    
Predicted Functional Partners:
EEF66647.1
KEGG: bcz:BCZK3833 1.1e-15 transcriptional regulator, GntR family; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEF66648.1
ABC transporter, ATP-binding protein; KEGG: eca:ECA1073 2.9e-22 fecE; iron(III) dicitrate transport ATP-binding protein K02013; Psort location: CytoplasmicMembrane, score: 9.49.
       0.773
EEF66650.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.97.
      
0.592
EEF66646.1
Amidohydrolase family protein; KEGG: pat:Patl_0847 7.8e-07 aminocarboxymuconate-semialdehyde decarboxylase K03392; Psort location: Cytoplasmic, score: 8.87.
       0.532
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.