STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluBKEGG: sep:SE1177 6.6e-64 ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 8.87; Belongs to the pseudouridine synthase RsuA family. (244 aa)    
Predicted Functional Partners:
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.922
cmk
Cytidylate kinase; KEGG: bsu:BG11004 3.8e-52 cmk, jofC, ypfC; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
  
 0.917
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.861
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
  
 0.839
EEF66621.1
HAD hydrolase, TIGR02254 family; KEGG: btk:BT9727_5088 4.5e-42 hydrolase, haloacid dehalogenase-like family; possible 2-haloacid dehalogenase K01560; Psort location: Cytoplasmic, score: 8.87.
       0.794
xth
Exodeoxyribonuclease III; KEGG: cac:CAC0222 2.9e-86 exoA; exodeoxyribonuclease (exoA) K01142; Psort location: Cytoplasmic, score: 9.98.
  
    0.748
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
 
 
 0.689
EEF67625.1
Hypothetical protein; KEGG: sab:SAB0735 9.9e-11 probable carboxylesterase precursor K03928.
  
    0.680
EEF69394.1
Hypothetical protein; KEGG: eci:UTI89_C1034 1.8e-68 yccW; hypothetical protein YccW K06969; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.673
EEF68120.1
Hypothetical protein; KEGG: vfi:VF1505 3.6e-63 methyltransferase K06969; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.673
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.