STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66429.1Hypothetical protein; KEGG: dps:DP0632 3.0e-26 probable glutamate synthase, beta subunit K00266; Psort location: Cytoplasmic, score: 8.87. (85 aa)    
Predicted Functional Partners:
gltA
KEGG: tte:TTE0567 5.5e-131 gltD; NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266; Psort location: Cytoplasmic, score: 9.98.
 0.999
EEF66444.1
Oxidoreductase NAD-binding domain protein; KEGG: dps:DP0632 6.0e-38 probable glutamate synthase, beta subunit K00266; Psort location: Cytoplasmic, score: 8.87.
     0.992
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.986
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737.
  
 
 0.978
EEF68319.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
  0.926
EEF66575.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
  0.926
carA
KEGG: gka:GK1151 1.2e-96 carbamoyl-phosphate synthase(glutamine-hydrolyzing) small chain K01956; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarA family.
  
 
 0.925
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 
 0.925
pyrF-2
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
 
 0.924
pyrB
KEGG: gka:GK1149 5.6e-90 pyrB; aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.920
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.