STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mltGYceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (360 aa)    
Predicted Functional Partners:
udk
Uridine kinase; KEGG: bha:BH1275 5.8e-65 udk; uridine kinase K00876; Psort location: Cytoplasmic, score: 8.87.
  
    0.901
EEF66315.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0473 family.
 
     0.863
EEF68057.1
Putative cell division protein FtsA; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.813
EEF66314.1
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.792
EEF66313.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     
 0.778
EEF66175.1
Transglycosylase; KEGG: bcz:BCZK1431 4.6e-72 penicillin-binding protein; Psort location: Extracellular, score: 9.55.
 
   
 0.761
ponA
KEGG: gka:GK2168 1.5e-105 penicillin-binding protein 1A/1B (PBP1) (penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)) K05366; Psort location: Extracellular, score: 9.55.
 
   
 0.758
EEF66312.1
DHHA1 domain protein; KEGG: cpr:CPR_1750 1.3e-81 alaS; alanyl-tRNA synthetase K01872; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.747
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.745
greA
Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
     
 0.725
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.