STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66258.1Membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (206 aa)    
Predicted Functional Partners:
EEF66257.1
Phage integrase SAM-like domain protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
    0.735
EEF66619.1
Transporter gate domain protein; Psort location: CytoplasmicMembrane, score: 9.99.
   
  
 0.728
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.696
EEF68895.1
RDD family protein.
  
    0.679
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.658
EEF66259.1
Hypothetical protein.
       0.475
EEF68015.1
Peptidase, M50 family; KEGG: bha:BH3015 3.5e-19 spoIVFB; protease (processing of pro-sigma-K to active sigma-K) K06402; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.426
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.