STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF66221.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (345 aa)    
Predicted Functional Partners:
EEF66219.1
Hypothetical protein; KEGG: sha:SH0064 3.0e-25 hsdM; type I restriction-modification system DNA methylase K03427; Psort location: Cytoplasmic, score: 8.87.
  
    0.879
EEF68314.1
Hypothetical protein; KEGG: cff:CFF8240_0988 4.7e-31 type I restriction-modification system, S subunit K01152.
 
    0.770
EEF68313.1
Hypothetical protein; KEGG: xcv:XCV0510 6.9e-37 hsdS1; type I site-specific deoxyribonuclease (specificity subunit) K01154.
 
    0.757
EEF68298.1
Hypothetical protein; KEGG: mst:Msp_0484 1.3e-37 predicted type I restriction-modification system subunit K01154; Psort location: Cytoplasmic, score: 8.87.
 
    0.729
EEF69075.1
N-6 DNA Methylase; KEGG: gka:GK0343 9.7e-166 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit) K03427; Psort location: Cytoplasmic, score: 8.87.
  
    0.696
EEF69072.1
KEGG: fal:FRAAL3318 4.4e-39 hsdS; type I restriction modification enzyme protein S K01154; Psort location: Cytoplasmic, score: 8.87.
  
    0.692
EEF69074.1
KEGG: sar:SAR1898 6.9e-37 putative type I restriction modification DNA specificity protein K01154.
  
    0.690
EEF66220.1
DNA-binding helix-turn-helix protein; KEGG: bce:BC3704 0.0015 LexA repressor K01356; Psort location: Cytoplasmic, score: 8.87.
       0.651
EEF66218.1
Hypothetical protein; KEGG: fnu:FN0522 2.5e-07 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.87.
       0.474
EEF66222.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87; ORF located using Blastx.
     
 0.458
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.