STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF65802.1Transglutaminase-like protein. (313 aa)    
Predicted Functional Partners:
EEF65800.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.945
EEF65801.1
Bacterial type II secretion system domain protein F; Psort location: CytoplasmicMembrane, score: 7.63.
 
     0.882
EEF65796.1
Twitching motility protein; KEGG: pen:PSEEN2333 3.8e-19 xcpR-2; type II secretion pathway protein E K01509; Psort location: Cytoplasmic, score: 9.98.
 
     0.866
EEF65804.1
Transcriptional regulatory protein, C-terminal domain protein; KEGG: rle:RL3062 7.1e-05 cya3; putative adenylate cyclase K01768; Psort location: Cytoplasmic, score: 8.87.
 
     0.855
EEF67665.1
KEGG: reh:H16_B1607 1.8e-06 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
 
     0.781
EEF67719.1
KEGG: reh:H16_B1607 1.5e-11 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
 
     0.760
EEF65797.1
Hypothetical protein.
       0.741
EEF65798.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.741
EEF65799.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.741
EEF68828.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: ava:Ava_1777 2.6e-45 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.645
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.