STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF65809.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (426 aa)    
Predicted Functional Partners:
EEF69689.1
RNA polymerase sigma factor, sigma-70 family.
  
  
 0.704
EEF68719.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.704
EEF68660.1
Sigma-70, region 4; KEGG: btl:BALH_3229 0.0051 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.704
sigV
KEGG: bcz:BCZK3297 2.2e-17 RNA polymerase ECF-type sigma factor K03088; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.704
EEF67744.1
Sigma-70 region 2; KEGG: btl:BALH_3229 2.0e-14 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.704
EEF66603.1
Sigma-70 region 2; KEGG: reh:H16_A2563 2.2e-05 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.704
EEF66554.1
Sigma-70, region 4.
  
  
 0.704
EEF66492.1
RNA polymerase sigma factor, sigma-70 family.
  
  
 0.704
EEF65812.1
YihY family protein; KEGG: ctc:CTC02522 2.1e-12 ribonuclease BN; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.655
EEF65810.1
Hypothetical protein; KEGG: spr:spr0932 6.0e-09 putative RNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
       0.578
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.