STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF65812.1YihY family protein; KEGG: ctc:CTC02522 2.1e-12 ribonuclease BN; Psort location: CytoplasmicMembrane, score: 9.99. (268 aa)    
Predicted Functional Partners:
rumA-3
23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: bha:BH0687 3.0e-75 RNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.766
EEF65810.1
Hypothetical protein; KEGG: spr:spr0932 6.0e-09 putative RNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
       0.764
EEF69381.1
Putative peptidoglycan binding domain protein; KEGG: bcl:ABC1351 0.00011 xlyA; N-acetylmuramoyl-L-alanine amidase K01447.
 
   
 0.743
EEF66304.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.736
EEF67549.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.678
EEF65961.1
KEGG: ccr:CC0918 1.5e-05 pyridoxamine 5'-phosphate oxidase K00275; Psort location: Cytoplasmic, score: 8.87.
  
    0.678
EEF66177.1
Hypothetical protein; KEGG: lwe:lwe2040 1.5e-09 cell division protein DivIVA K01549.
  
   
 0.671
EEF65809.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.655
EEF66395.1
Transporter, major facilitator family protein; KEGG: eci:UTI89_C3355 0.00023 nupG; transport of nucleosides, permease protein K03289; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.632
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
   
 
 0.626
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.