STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF65813.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (379 aa)    
Predicted Functional Partners:
EEF65814.1
MBOAT family protein; KEGG: pen:PSEEN4543 1.5e-89 algI; alginate O-acetylation protein AlgI K00680; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the membrane-bound acyltransferase family.
     0.954
EEF65815.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.940
EEF68233.1
KEGG: hpa:HPAG1_0538 1.3e-05 acyl carrier protein K01162; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.924
EEF67750.1
KEGG: hpa:HPAG1_0538 2.0e-07 acyl carrier protein K01162; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.924
srfAA
Surfactin synthetase, subunit 1; KEGG: xac:XAC3922 4.3e-57 entF; ATP-dependent serine activating enzyme K02364; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.819
EEF67274.1
MBOAT family protein; KEGG: hne:HNE_2072 9.1e-67 algI; alginate biosynthesis protein AlgI K00680; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the membrane-bound acyltransferase family.
     0.694
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.681
EEF66386.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.657
EEF68005.1
Putative rod shape-determining protein MreD; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.625
EEF65812.1
YihY family protein; KEGG: ctc:CTC02522 2.1e-12 ribonuclease BN; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.590
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.