EKY29492.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EKY29492.1

Hypothetical protein; KEGG: bsu:BSU34320 1.7e-11 epsF; putative glycosyltransferase involved in extracellular matrix formation. (102 aa)

Predicted Functional Partners:

EKY29493.1

0.944

EKY24021.1

0.832

EKY22237.1

0.822

EKY29491.1

0.801

EKY23482.1

0.793

EKY29474.1

0.661

EKY29494.1

0.627

EKY29490.1

0.611

EKY29014.1

0.608

EKY29489.1

0.606

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY22237.1	EKY23482.1	HMPREF0216_03281	HMPREF0216_02918	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.931
EKY22237.1	EKY24021.1	HMPREF0216_03281	HMPREF0216_02780	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	0.432
EKY22237.1	EKY29474.1	HMPREF0216_03281	HMPREF0216_00181	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	Glycosyltransferase, group 2 family protein; KEGG: chu:CHU_1044 4.9e-32 b-glycosyltransferase.	0.735
EKY22237.1	EKY29491.1	HMPREF0216_03281	HMPREF0216_00198	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	KEGG: ldb:Ldb0450 1.9e-38 tarB; putative CDP-glycerol:glycerophosphate glycerophosphotransferase K01005; Psort location: CytoplasmicMembrane, score: 9.51.	0.817
EKY22237.1	EKY29492.1	HMPREF0216_03281	HMPREF0216_00199	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bsu:BSU34320 1.7e-11 epsF; putative glycosyltransferase involved in extracellular matrix formation.	0.822
EKY22237.1	EKY29493.1	HMPREF0216_03281	HMPREF0216_00200	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bsu:BSU34320 6.3e-40 epsF; putative glycosyltransferase involved in extracellular matrix formation; Psort location: Cytoplasmic, score: 7.50.	0.796
EKY23482.1	EKY22237.1	HMPREF0216_02918	HMPREF0216_03281	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	0.931
EKY23482.1	EKY24021.1	HMPREF0216_02918	HMPREF0216_02780	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	0.929
EKY23482.1	EKY29014.1	HMPREF0216_02918	HMPREF0216_00373	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: cco:CCC13826_0528 0.00011 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.	0.673
EKY23482.1	EKY29474.1	HMPREF0216_02918	HMPREF0216_00181	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Glycosyltransferase, group 2 family protein; KEGG: chu:CHU_1044 4.9e-32 b-glycosyltransferase.	0.976
EKY23482.1	EKY29489.1	HMPREF0216_02918	HMPREF0216_00196	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	LICD family protein; KEGG: eel:EUBELI_00099 1.0e-32 lipopolysaccharide cholinephosphotransferase; K07271 lipopolysaccharide cholinephosphotransferase; Psort location: Cytoplasmic, score: 7.50.	0.572
EKY23482.1	EKY29490.1	HMPREF0216_02918	HMPREF0216_00197	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Polysaccharide biosynthesis protein; KEGG: cco:CCC13826_0528 7.9e-12 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.	0.673
EKY23482.1	EKY29491.1	HMPREF0216_02918	HMPREF0216_00198	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: ldb:Ldb0450 1.9e-38 tarB; putative CDP-glycerol:glycerophosphate glycerophosphotransferase K01005; Psort location: CytoplasmicMembrane, score: 9.51.	0.958
EKY23482.1	EKY29492.1	HMPREF0216_02918	HMPREF0216_00199	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bsu:BSU34320 1.7e-11 epsF; putative glycosyltransferase involved in extracellular matrix formation.	0.793
EKY23482.1	EKY29493.1	HMPREF0216_02918	HMPREF0216_00200	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bsu:BSU34320 6.3e-40 epsF; putative glycosyltransferase involved in extracellular matrix formation; Psort location: Cytoplasmic, score: 7.50.	0.793
EKY23482.1	EKY29494.1	HMPREF0216_02918	HMPREF0216_00201	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: bcl:ABC3101 6.0e-51 tagD; glycerol-3-phosphate cytidylyltransferase K00980; Psort location: Cytoplasmic, score: 9.97.	0.668
EKY24021.1	EKY22237.1	HMPREF0216_02780	HMPREF0216_03281	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	Condensation domain protein; KEGG: ppy:PPE_00083 2.2e-20 bacitracin synthetase 3; Psort location: Cytoplasmic, score: 7.50.	0.432
EKY24021.1	EKY23482.1	HMPREF0216_02780	HMPREF0216_02918	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.929
EKY24021.1	EKY29491.1	HMPREF0216_02780	HMPREF0216_00198	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	KEGG: ldb:Ldb0450 1.9e-38 tarB; putative CDP-glycerol:glycerophosphate glycerophosphotransferase K01005; Psort location: CytoplasmicMembrane, score: 9.51.	0.839
EKY24021.1	EKY29492.1	HMPREF0216_02780	HMPREF0216_00199	Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.	Hypothetical protein; KEGG: bsu:BSU34320 1.7e-11 epsF; putative glycosyltransferase involved in extracellular matrix formation.	0.832