Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY29412.1Hypothetical protein; KEGG: sso:SSO9221 0.0037 rpoM-2; DNA-directed RNA polymerase, subunit M (RpoM-2) K03057; Psort location: CytoplasmicMembrane, score: 9.55. (355 aa)    
Predicted Functional Partners:
EKY29413.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
 
  
 0.982
EKY27038.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.896
EKY28931.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.36.
  
  
 0.653
EKY27422.1
Hypothetical protein; KEGG: tva:TVAG_332600 1.6e-09 hypothetical protein; K10866 DNA repair protein RAD50.
  
  
 0.479
EKY29414.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.455
EKY27037.1
PspA/IM30 family protein; KEGG: edi:EDI_048910 1.5e-08 intracellular protein transport protein USO1; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.407
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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