EKY29082.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY29082.1

Putative arginine ABC transporter, ATP-binding protein ArtM. (178 aa)

Predicted Functional Partners:

EKY29083.1

0.999

EKY26704.1

0.989

EKY29084.1

0.986

EKY22241.1

0.969

EKY29081.1

0.966

EKY26705.1

0.956

EKY26702.1

0.945

EKY22242.1

0.886

EKY22049.1

0.602

EKY28426.1

0.472

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY22049.1	EKY29082.1	HMPREF0216_03379	HMPREF0216_00441	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	Putative arginine ABC transporter, ATP-binding protein ArtM.	0.602
EKY22241.1	EKY22242.1	HMPREF0216_03285	HMPREF0216_03286	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	0.998
EKY22241.1	EKY26702.1	HMPREF0216_03285	HMPREF0216_01887	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, substrate-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.	0.812
EKY22241.1	EKY26704.1	HMPREF0216_03285	HMPREF0216_01889	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein.	0.479
EKY22241.1	EKY26705.1	HMPREF0216_03285	HMPREF0216_01890	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein.	0.696
EKY22241.1	EKY29081.1	HMPREF0216_03285	HMPREF0216_00440	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.959
EKY22241.1	EKY29082.1	HMPREF0216_03285	HMPREF0216_00441	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	Putative arginine ABC transporter, ATP-binding protein ArtM.	0.969
EKY22241.1	EKY29083.1	HMPREF0216_03285	HMPREF0216_00442	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	Putative arginine ABC transporter, permease protein ArtQ.	0.691
EKY22241.1	EKY29084.1	HMPREF0216_03285	HMPREF0216_00443	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	Putative arginine ABC transporter, periplasmic arginine-binding protein ArtP; Belongs to the bacterial solute-binding protein 3 family.	0.987
EKY22242.1	EKY22241.1	HMPREF0216_03286	HMPREF0216_03285	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
EKY22242.1	EKY26704.1	HMPREF0216_03286	HMPREF0216_01889	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	ABC transporter, permease protein.	0.951
EKY22242.1	EKY26705.1	HMPREF0216_03286	HMPREF0216_01890	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	ABC transporter, permease protein.	0.944
EKY22242.1	EKY29081.1	HMPREF0216_03286	HMPREF0216_00440	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.883
EKY22242.1	EKY29082.1	HMPREF0216_03286	HMPREF0216_00441	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	Putative arginine ABC transporter, ATP-binding protein ArtM.	0.886
EKY22242.1	EKY29083.1	HMPREF0216_03286	HMPREF0216_00442	ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 9.3e-39 fliY; cystine transporter subunit K02424; Psort location: Cytoplasmic, score: 7.50.	Putative arginine ABC transporter, permease protein ArtQ.	0.988
EKY26702.1	EKY22241.1	HMPREF0216_01887	HMPREF0216_03285	ABC transporter, substrate-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.	Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 1.1e-33 sdhA; succinate dehydrogenase flavoprotein subunit; Psort location: CytoplasmicMembrane, score: 10.00.	0.812
EKY26702.1	EKY26704.1	HMPREF0216_01887	HMPREF0216_01889	ABC transporter, substrate-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter, permease protein.	0.967
EKY26702.1	EKY26705.1	HMPREF0216_01887	HMPREF0216_01890	ABC transporter, substrate-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter, permease protein.	0.963
EKY26702.1	EKY29081.1	HMPREF0216_01887	HMPREF0216_00440	ABC transporter, substrate-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.	Hypothetical protein.	0.938
EKY26702.1	EKY29082.1	HMPREF0216_01887	HMPREF0216_00441	ABC transporter, substrate-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.	Putative arginine ABC transporter, ATP-binding protein ArtM.	0.945