EKY28935.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EKY28935.1

KEGG: ttm:Tthe_0587 2.5e-36 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase. (289 aa)

Predicted Functional Partners:

EKY28936.1

0.987

EKY28426.1

0.853

EKY27622.1

0.844

EKY25756.1

0.820

EKY28934.1

0.741

EKY28933.1

0.701

EKY28937.1

0.682

EKY28176.1

0.641

gpsA

0.617

EKY29494.1

0.612

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY25756.1	EKY27622.1	HMPREF0216_02338	HMPREF0216_01265	[2Fe-2S]-binding domain protein.	Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02435 2.8e-53 sarcosine oxidase alpha subunit K00302; Psort location: CytoplasmicMembrane, score: 8.78.	0.818
EKY25756.1	EKY28426.1	HMPREF0216_02338	HMPREF0216_00777	[2Fe-2S]-binding domain protein.	Class II glutamine amidotransferase.	0.934
EKY25756.1	EKY28935.1	HMPREF0216_02338	HMPREF0216_00474	[2Fe-2S]-binding domain protein.	KEGG: ttm:Tthe_0587 2.5e-36 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase.	0.820
EKY25756.1	EKY28936.1	HMPREF0216_02338	HMPREF0216_00475	[2Fe-2S]-binding domain protein.	[2Fe-2S]-binding domain protein; KEGG: apr:Apre_1490 6.2e-25 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	0.823
EKY25756.1	EKY29494.1	HMPREF0216_02338	HMPREF0216_00201	[2Fe-2S]-binding domain protein.	KEGG: bcl:ABC3101 6.0e-51 tagD; glycerol-3-phosphate cytidylyltransferase K00980; Psort location: Cytoplasmic, score: 9.97.	0.545
EKY25756.1	gpsA	HMPREF0216_02338	HMPREF0216_01831	[2Fe-2S]-binding domain protein.	Putative glycerol-3-phosphate dehydrogenase [NAD(P)+ ]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.462
EKY27622.1	EKY25756.1	HMPREF0216_01265	HMPREF0216_02338	Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02435 2.8e-53 sarcosine oxidase alpha subunit K00302; Psort location: CytoplasmicMembrane, score: 8.78.	[2Fe-2S]-binding domain protein.	0.818
EKY27622.1	EKY28426.1	HMPREF0216_01265	HMPREF0216_00777	Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02435 2.8e-53 sarcosine oxidase alpha subunit K00302; Psort location: CytoplasmicMembrane, score: 8.78.	Class II glutamine amidotransferase.	0.806
EKY27622.1	EKY28935.1	HMPREF0216_01265	HMPREF0216_00474	Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02435 2.8e-53 sarcosine oxidase alpha subunit K00302; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: ttm:Tthe_0587 2.5e-36 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase.	0.844
EKY27622.1	EKY28936.1	HMPREF0216_01265	HMPREF0216_00475	Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02435 2.8e-53 sarcosine oxidase alpha subunit K00302; Psort location: CytoplasmicMembrane, score: 8.78.	[2Fe-2S]-binding domain protein; KEGG: apr:Apre_1490 6.2e-25 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	0.846
EKY28176.1	EKY28426.1	HMPREF0216_01019	HMPREF0216_00777	Lipid kinase, YegS/Rv2252/BmrU family.	Class II glutamine amidotransferase.	0.442
EKY28176.1	EKY28935.1	HMPREF0216_01019	HMPREF0216_00474	Lipid kinase, YegS/Rv2252/BmrU family.	KEGG: ttm:Tthe_0587 2.5e-36 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase.	0.641
EKY28176.1	EKY28936.1	HMPREF0216_01019	HMPREF0216_00475	Lipid kinase, YegS/Rv2252/BmrU family.	[2Fe-2S]-binding domain protein; KEGG: apr:Apre_1490 6.2e-25 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	0.641
EKY28176.1	gpsA	HMPREF0216_01019	HMPREF0216_01831	Lipid kinase, YegS/Rv2252/BmrU family.	Putative glycerol-3-phosphate dehydrogenase [NAD(P)+ ]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.794
EKY28426.1	EKY25756.1	HMPREF0216_00777	HMPREF0216_02338	Class II glutamine amidotransferase.	[2Fe-2S]-binding domain protein.	0.934
EKY28426.1	EKY27622.1	HMPREF0216_00777	HMPREF0216_01265	Class II glutamine amidotransferase.	Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02435 2.8e-53 sarcosine oxidase alpha subunit K00302; Psort location: CytoplasmicMembrane, score: 8.78.	0.806
EKY28426.1	EKY28176.1	HMPREF0216_00777	HMPREF0216_01019	Class II glutamine amidotransferase.	Lipid kinase, YegS/Rv2252/BmrU family.	0.442
EKY28426.1	EKY28935.1	HMPREF0216_00777	HMPREF0216_00474	Class II glutamine amidotransferase.	KEGG: ttm:Tthe_0587 2.5e-36 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase.	0.853
EKY28426.1	EKY28936.1	HMPREF0216_00777	HMPREF0216_00475	Class II glutamine amidotransferase.	[2Fe-2S]-binding domain protein; KEGG: apr:Apre_1490 6.2e-25 FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	0.853
EKY28933.1	EKY28934.1	HMPREF0216_00472	HMPREF0216_00473	HDIG domain protein.	3H domain protein; KEGG: mmg:MTBMA_c04050 0.0025 2-phosphoglycerate kinase related protein with an additional conserved domain K07105; Psort location: Cytoplasmic, score: 7.50.	0.790