Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EKY24034.1 | EKY26309.1 | HMPREF0216_02793 | HMPREF0216_02093 | S1 RNA binding domain protein. | Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 3.4e-18 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50. | 0.455 |
| EKY24034.1 | nfo | HMPREF0216_02793 | HMPREF0216_00551 | S1 RNA binding domain protein. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.448 |
| EKY24034.1 | polA | HMPREF0216_02793 | HMPREF0216_02185 | S1 RNA binding domain protein. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.800 |
| EKY26229.1 | EKY28580.1 | HMPREF0216_02268 | HMPREF0216_00633 | Exodeoxyribonuclease III. | KEGG: cbt:CLH_0367 2.4e-111 8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase; Psort location: Cytoplasmic, score: 7.50. | 0.927 |
| EKY26229.1 | nfo | HMPREF0216_02268 | HMPREF0216_00551 | Exodeoxyribonuclease III. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.904 |
| EKY26229.1 | nth | HMPREF0216_02268 | HMPREF0216_01011 | Exodeoxyribonuclease III. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.998 |
| EKY26229.1 | polA | HMPREF0216_02268 | HMPREF0216_02185 | Exodeoxyribonuclease III. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
| EKY26229.1 | ung | HMPREF0216_02268 | HMPREF0216_02896 | Exodeoxyribonuclease III. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.893 |
| EKY26309.1 | EKY24034.1 | HMPREF0216_02093 | HMPREF0216_02793 | Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 3.4e-18 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50. | S1 RNA binding domain protein. | 0.455 |
| EKY26309.1 | nfo | HMPREF0216_02093 | HMPREF0216_00551 | Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 3.4e-18 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.529 |
| EKY26309.1 | polA | HMPREF0216_02093 | HMPREF0216_02185 | Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 3.4e-18 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.522 |
| EKY26451.1 | nfo | HMPREF0216_01947 | HMPREF0216_00551 | AP endonuclease, family 2; KEGG: sat:SYN_01340 3.4e-18 endonuclease IV K01151; Psort location: Cytoplasmic, score: 7.50. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.491 |
| EKY28580.1 | EKY26229.1 | HMPREF0216_00633 | HMPREF0216_02268 | KEGG: cbt:CLH_0367 2.4e-111 8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase; Psort location: Cytoplasmic, score: 7.50. | Exodeoxyribonuclease III. | 0.927 |
| EKY28580.1 | nfo | HMPREF0216_00633 | HMPREF0216_00551 | KEGG: cbt:CLH_0367 2.4e-111 8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase; Psort location: Cytoplasmic, score: 7.50. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.561 |
| EKY28580.1 | nth | HMPREF0216_00633 | HMPREF0216_01011 | KEGG: cbt:CLH_0367 2.4e-111 8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase; Psort location: Cytoplasmic, score: 7.50. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.512 |
| EKY28580.1 | polA | HMPREF0216_00633 | HMPREF0216_02185 | KEGG: cbt:CLH_0367 2.4e-111 8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase; Psort location: Cytoplasmic, score: 7.50. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.601 |
| EKY28806.1 | nfo | HMPREF0216_00550 | HMPREF0216_00551 | ErfK/YbiS/YcfS/YnhG; KEGG: pfa:PF10_0191 0.00014 tRNA methyltransferase, putative. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.529 |
| EKY28808.1 | nfo | HMPREF0216_00552 | HMPREF0216_00551 | Hypothetical protein; KEGG: slg:SLGD_01278 0.0050 ACT domain-containing protein; K06209 chorismate mutase. | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.490 |
| nfo | EKY24034.1 | HMPREF0216_00551 | HMPREF0216_02793 | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | S1 RNA binding domain protein. | 0.448 |
| nfo | EKY26229.1 | HMPREF0216_00551 | HMPREF0216_02268 | Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Exodeoxyribonuclease III. | 0.904 |
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