STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY28792.1General secretory system II, protein E protein; KEGG: apb:SAR116_2518 4.4e-09 type II secretion system PilB K02652; Psort location: Cytoplasmic, score: 9.97. (224 aa)    
Predicted Functional Partners:
EKY28791.1
KEGG: pen:PSEEN2333 9.4e-62 XcpR-2; type II secretion pathway protein E K02454; Psort location: Cytoplasmic, score: 9.97.
     0.986
EKY28790.1
Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 1.8e-42 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.964
EKY26978.1
Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 1.1e-15 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.945
EKY26664.1
Twitching mobility protein.
  
 0.945
EKY28793.1
KEGG: cbe:Cbei_4219 1.5e-77 peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.936
EKY22360.1
Type IV pilus assembly protein PilM; KEGG: edi:EDI_273920 5.1e-06 E3 ubiquitin protein ligase BRE1A.
 
 
 0.889
EKY28789.1
Prepilin-type cleavage/methylation protein; KEGG: rce:RC1_1500 0.0035 rpoZ; DNA-directed RNA polymerase, omega subunit, putative K03060.
 
 0.774
EKY26977.1
General secretory pathway protein E family protein; KEGG: cco:CCC13826_1231 2.3e-67 L(+)-tartrate dehydratase subunit beta (L-TTD beta) K02454; Psort location: Cytoplasmic, score: 9.97.
 
     0.774
EKY22361.1
Fimbrial assembly protein PilN.
 
 
 0.708
EKY22211.1
Hypothetical protein; KEGG: dtu:Dtur_0249 0.0018 ABC transporter related; K02013 iron complex transport system ATP-binding protein; Psort location: Cytoplasmic, score: 7.50.
   
  
 0.688
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.