STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY28756.1ABC transporter, substrate-binding protein; KEGG: apb:SAR116_2227 4.2e-27 periplasmic solute binding protein K09815; Psort location: CytoplasmicMembrane, score: 9.68. (321 aa)    
Predicted Functional Partners:
EKY28758.1
ABC 3 transport family protein; KEGG: apb:SAR116_2225 2.9e-28 ABC transporter, membrane spanning protein, zinc K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.995
EKY28757.1
ABC transporter, ATP-binding domain protein; KEGG: cce:Ccel_3414 7.5e-37 ABC transporter related; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.939
rpsZ
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.668
EKY27043.1
Putative permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.662
EKY27041.1
CobW/P47K family protein; KEGG: reh:H16_A3373 1.9e-22 G3E family GTPase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.638
EKY27042.1
Hypothetical protein; KEGG: mfe:Mefer_1539 3.4e-05 L-seryl-tRNA(sec) kinase; K10837 O-phosphoseryl-tRNA(Sec) kinase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.633
EKY26247.1
KEGG: cbt:CLH_1037 0. phosphoribosylformylglycinamidine synthase K01952; Psort location: Cytoplasmic, score: 9.97.
     
 0.613
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.572
EKY26460.1
Putative ferrichrome ABC transporter, ATP-binding protein FhuC; KEGG: cbe:Cbei_2141 1.3e-112 ABC transporter related; K02013 iron complex transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.553
EKY24034.1
S1 RNA binding domain protein.
  
  
 0.543
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.