Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY28604.1YeeE/YedE family protein; Psort location: CytoplasmicMembrane, score: 9.55. (104 aa)    
Predicted Functional Partners:
EKY28603.1
Hypothetical protein; KEGG: apb:SAR116_2006 0.0037 gene II and X protein K07112; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.950
EKY28605.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.526
EKY28602.1
Creatinase; KEGG: cbt:CLH_0088 2.2e-197 Xaa-Pro aminopeptidase 1 K01262; Psort location: Cytoplasmic, score: 9.67.
       0.455
EKY25969.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
  
  
 0.438
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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