STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY28403.1KEGG: bde:BDP_0153 3.5e-174 ABC-type transporter, permease component; Psort location: CytoplasmicMembrane, score: 10.00. (601 aa)    
Predicted Functional Partners:
EKY28404.1
KEGG: bde:BDP_0154 5.2e-180 ABC-type transporter, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
    
0.850
EKY22070.1
Low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 6.3e-56 protein tyrosine phosphatase; K03741 arsenate reductase; Psort location: Cytoplasmic, score: 7.50; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
   
   0.463
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.456
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.456
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.445
EKY23308.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC01178 1.1e-209 NADH oxidase K00356; Psort location: Cytoplasmic, score: 9.67.
   
 
 0.444
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.435
EKY22236.1
KEGG: eci:UTI89_C1220 4.4e-09 acpP; acyl carrier protein K02078; Psort location: Cytoplasmic, score: 9.97.
    
   0.435
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.435
EKY28603.1
Hypothetical protein; KEGG: apb:SAR116_2006 0.0037 gene II and X protein K07112; Psort location: CytoplasmicMembrane, score: 10.00.
   
   0.428
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.