EKY28063.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EKY28063.1

Hypothetical protein. (141 aa)

Predicted Functional Partners:

EKY28060.1

0.877

EKY28061.1

0.859

EKY28065.1

0.797

EKY28062.1

0.791

EKY28089.1

0.790

EKY28085.1

0.746

EKY28082.1

0.739

EKY28067.1

0.736

EKY28080.1

0.722

EKY28091.1

0.709

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY28060.1	EKY28061.1	HMPREF0216_00902	HMPREF0216_00903	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	0.801
EKY28060.1	EKY28062.1	HMPREF0216_00902	HMPREF0216_00904	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Hypothetical protein.	0.613
EKY28060.1	EKY28063.1	HMPREF0216_00902	HMPREF0216_00905	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Hypothetical protein.	0.877
EKY28060.1	EKY28065.1	HMPREF0216_00902	HMPREF0216_00907	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Toxin secretion/phage lysis holin.	0.821
EKY28060.1	EKY28067.1	HMPREF0216_00902	HMPREF0216_00909	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Phage minor structural protein.	0.582
EKY28060.1	EKY28080.1	HMPREF0216_00902	HMPREF0216_00922	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Phage major capsid protein, HK97 family.	0.761
EKY28060.1	EKY28082.1	HMPREF0216_00902	HMPREF0216_00924	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Phage portal protein, HK97 family.	0.750
EKY28060.1	EKY28085.1	HMPREF0216_00902	HMPREF0216_00927	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	Putative phage terminase, large subunit.	0.750
EKY28060.1	EKY28089.1	HMPREF0216_00902	HMPREF0216_00931	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.792
EKY28060.1	EKY28091.1	HMPREF0216_00902	HMPREF0216_00933	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	HNH endonuclease domain protein.	0.530
EKY28061.1	EKY28060.1	HMPREF0216_00903	HMPREF0216_00902	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Resolvase protein; KEGG: apb:SAR116_1288 4.5e-08 resolvase, N-terminal domain protein.	0.801
EKY28061.1	EKY28062.1	HMPREF0216_00903	HMPREF0216_00904	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.613
EKY28061.1	EKY28063.1	HMPREF0216_00903	HMPREF0216_00905	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.859
EKY28061.1	EKY28065.1	HMPREF0216_00903	HMPREF0216_00907	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Toxin secretion/phage lysis holin.	0.823
EKY28061.1	EKY28067.1	HMPREF0216_00903	HMPREF0216_00909	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Phage minor structural protein.	0.521
EKY28061.1	EKY28080.1	HMPREF0216_00903	HMPREF0216_00922	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Phage major capsid protein, HK97 family.	0.760
EKY28061.1	EKY28082.1	HMPREF0216_00903	HMPREF0216_00924	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Phage portal protein, HK97 family.	0.745
EKY28061.1	EKY28085.1	HMPREF0216_00903	HMPREF0216_00927	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	Putative phage terminase, large subunit.	0.744
EKY28061.1	EKY28089.1	HMPREF0216_00903	HMPREF0216_00931	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.784
EKY28061.1	EKY28091.1	HMPREF0216_00903	HMPREF0216_00933	Resolvase protein; KEGG: apb:SAR116_1288 0.00053 resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 7.50.	HNH endonuclease domain protein.	0.492