Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY28081.1Endopeptidase Clp; Belongs to the peptidase S14 family. (231 aa)    
Predicted Functional Partners:
EKY28082.1
Phage portal protein, HK97 family.
 
    0.969
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
 
 0.961
EKY28080.1
Phage major capsid protein, HK97 family.
 
    0.955
EKY28079.1
Phage DNA packaging protein.
 
    0.926
EKY28085.1
Putative phage terminase, large subunit.
 
     0.870
EKY26560.1
Phage portal protein.
 
    0.867
EKY28089.1
DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.855
EKY28078.1
Putative phage head-tail adaptor.
 
    0.848
EKY28075.1
Phage major tail protein, phi13 family.
 
     0.836
EKY25601.1
KEGG: cbl:CLK_2956 8.8e-272 clpC; negative regulator of genetic competence MecB/ClpC K03696; Psort location: Cytoplasmic, score: 9.97; Belongs to the ClpA/ClpB family.
   
 
 0.827
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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