EKY28085.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY28085.1

Putative phage terminase, large subunit. (515 aa)

Predicted Functional Partners:

EKY28086.1

0.939

EKY28088.1

0.894

EKY28091.1

0.888

EKY28082.1

0.880

EKY28081.1

0.876

EKY28089.1

0.876

EKY28080.1

0.874

EKY28079.1

0.848

EKY28075.1

0.811

EKY28090.1

0.811

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY28075.1	EKY28079.1	HMPREF0216_00917	HMPREF0216_00921	Phage major tail protein, phi13 family.	Phage DNA packaging protein.	0.855
EKY28075.1	EKY28080.1	HMPREF0216_00917	HMPREF0216_00922	Phage major tail protein, phi13 family.	Phage major capsid protein, HK97 family.	0.876
EKY28075.1	EKY28081.1	HMPREF0216_00917	HMPREF0216_00923	Phage major tail protein, phi13 family.	Endopeptidase Clp; Belongs to the peptidase S14 family.	0.839
EKY28075.1	EKY28082.1	HMPREF0216_00917	HMPREF0216_00924	Phage major tail protein, phi13 family.	Phage portal protein, HK97 family.	0.869
EKY28075.1	EKY28085.1	HMPREF0216_00917	HMPREF0216_00927	Phage major tail protein, phi13 family.	Putative phage terminase, large subunit.	0.811
EKY28075.1	EKY28086.1	HMPREF0216_00917	HMPREF0216_00928	Phage major tail protein, phi13 family.	Phage terminase, small subunit, P27 family.	0.857
EKY28075.1	EKY28088.1	HMPREF0216_00917	HMPREF0216_00930	Phage major tail protein, phi13 family.	Hypothetical protein.	0.741
EKY28075.1	EKY28089.1	HMPREF0216_00917	HMPREF0216_00931	Phage major tail protein, phi13 family.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.695
EKY28075.1	EKY28090.1	HMPREF0216_00917	HMPREF0216_00932	Phage major tail protein, phi13 family.	Hypothetical protein.	0.749
EKY28075.1	EKY28091.1	HMPREF0216_00917	HMPREF0216_00933	Phage major tail protein, phi13 family.	HNH endonuclease domain protein.	0.716
EKY28079.1	EKY28075.1	HMPREF0216_00921	HMPREF0216_00917	Phage DNA packaging protein.	Phage major tail protein, phi13 family.	0.855
EKY28079.1	EKY28080.1	HMPREF0216_00921	HMPREF0216_00922	Phage DNA packaging protein.	Phage major capsid protein, HK97 family.	0.972
EKY28079.1	EKY28081.1	HMPREF0216_00921	HMPREF0216_00923	Phage DNA packaging protein.	Endopeptidase Clp; Belongs to the peptidase S14 family.	0.928
EKY28079.1	EKY28082.1	HMPREF0216_00921	HMPREF0216_00924	Phage DNA packaging protein.	Phage portal protein, HK97 family.	0.973
EKY28079.1	EKY28085.1	HMPREF0216_00921	HMPREF0216_00927	Phage DNA packaging protein.	Putative phage terminase, large subunit.	0.848
EKY28079.1	EKY28086.1	HMPREF0216_00921	HMPREF0216_00928	Phage DNA packaging protein.	Phage terminase, small subunit, P27 family.	0.609
EKY28079.1	EKY28088.1	HMPREF0216_00921	HMPREF0216_00930	Phage DNA packaging protein.	Hypothetical protein.	0.548
EKY28079.1	EKY28089.1	HMPREF0216_00921	HMPREF0216_00931	Phage DNA packaging protein.	DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.	0.761
EKY28079.1	EKY28090.1	HMPREF0216_00921	HMPREF0216_00932	Phage DNA packaging protein.	Hypothetical protein.	0.727
EKY28079.1	EKY28091.1	HMPREF0216_00921	HMPREF0216_00933	Phage DNA packaging protein.	HNH endonuclease domain protein.	0.742